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Test 550 with GROMACS rebuild in #576#577

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trz42 wants to merge 8 commits into
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Test 550 with GROMACS rebuild in #576#577
trz42 wants to merge 8 commits into
EESSI:2023.06-software.eessi.iofrom
trz42:test_550_with_GROMACS_rebuild_in_576

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@trz42

@trz42 trz42 commented May 15, 2024

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We are interested in verifying if the ReFrame tests run are using the updated GROMACS build. We probably have to inspect the log files on the build cluster for this.

truib and others added 7 commits April 21, 2024 21:16
@truib
enable mounting previous overlay-upper read-only
08f8854
@ocaisa
Add psm2 to filtered dependencies for 2023.06
d043d86 
`PSM2` was introduced as a dependency of `libfabric` in easybuilders/easybuild-easyconfigs#20501. 

We already have PSM2 in the compat layer, so we can filter this dependency out, but longer term we probably actually want it since it should be built with accelerator support.
@ocaisa
Update configure_easybuild
ec2e8bd
@ocaisa
Add a rebuild of GROMACS
3cdb7b2
@ocaisa
Also add new dependency on scikit-build-core
fb329a4
@ocaisa
Use from-commit for merged PRs
792ea3e
@truib
Merge branch 'mount_overlay-upper_read-only' of github-trz:trz42/soft…
28739c4 
…ware-layer into test_550_with_GROMACS_rebuild_in_576
@trz42 trz42 added tests Related to software testing 2023.06-software.eessi.io 2023.06 version of software.eessi.io labels May 15, 2024
@eessi-bot

eessi-bot Bot commented May 15, 2024

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Instance eessi-bot-mc-aws is configured to build:

  • arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/generic for repo eessi-hpc.org-2023.06-software
  • arch x86_64/generic for repo eessi.io-2023.06-compat
  • arch x86_64/generic for repo eessi.io-2023.06-software
  • arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
  • arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi.io-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
  • arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/generic for repo eessi-hpc.org-2023.06-software
  • arch aarch64/generic for repo eessi.io-2023.06-compat
  • arch aarch64/generic for repo eessi.io-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
  • arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
  • arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
  • arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
  • arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

@eessi-bot

eessi-bot Bot commented May 15, 2024

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Instance eessi-bot-mc-azure is configured to build:

  • arch x86_64/amd/zen4 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/amd/zen4 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/amd/zen4 for repo eessi.io-2023.06-compat
  • arch x86_64/amd/zen4 for repo eessi.io-2023.06-software

@trz42

trz42 commented May 15, 2024

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bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

@eessi-bot

eessi-bot Bot commented May 15, 2024 •
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

@eessi-bot

eessi-bot Bot commented May 15, 2024 •
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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

    • no jobs were submitted

@eessi-bot

eessi-bot Bot commented May 15, 2024 •
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New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_577/10793

date job status comment
May 15 13:27:32 UTC 2024 submitted job id 10793 awaits release by job manager
May 15 13:27:49 UTC 2024 released job awaits launch by Slurm scheduler
May 15 13:28:51 UTC 2024 running job 10793 is running
May 15 13:33:56 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-10793.out
❌ found message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1715779762.tar.gzsize: 0 MiB (402291 bytes)
entries: 210
modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all
scikit-build-core/0.9.3-GCCcore-13.2.0.lua
software under 2023.06/software/linux/x86_64/amd/zen3/software
scikit-build-core/0.9.3-GCCcore-13.2.0
other under 2023.06/software/linux/x86_64/amd/zen3
no other files in tarball
May 15 13:33:56 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-10793.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@trz42

trz42 commented May 15, 2024

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bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

@eessi-bot

eessi-bot Bot commented May 15, 2024 •
edited
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

@eessi-bot

eessi-bot Bot commented May 15, 2024 •
edited
Loading

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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from trz42

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

    • no jobs were submitted

@eessi-bot

eessi-bot Bot commented May 15, 2024 •
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New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.05/pr_577/10794

date job status comment
May 15 13:49:09 UTC 2024 submitted job id 10794 awaits release by job manager
May 15 13:50:00 UTC 2024 released job awaits launch by Slurm scheduler
May 15 13:51:02 UTC 2024 running job 10794 is running
May 15 14:34:46 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-10794.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1715783356.tar.gzsize: 47 MiB (49816382 bytes)
entries: 980
modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all
GROMACS/2024.1-foss-2023b.lua
scikit-build-core/0.9.3-GCCcore-13.2.0.lua
software under 2023.06/software/linux/x86_64/amd/zen3/software
GROMACS/2024.1-foss-2023b
scikit-build-core/0.9.3-GCCcore-13.2.0
other under 2023.06/software/linux/x86_64/amd/zen3
no other files in tarball
May 15 14:34:46 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-10794.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

ocaisa added a commit to ocaisa/software-layer that referenced this pull request May 15, 2024
@ocaisa
Update 20240515-eb-4.9.1-GROMACS-correct-gmxapi-version.yml
375bf37 
Issues seen when trying to use `from-commit` in EESSI#577
@ocaisa

ocaisa commented May 15, 2024

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@trz42 Can you do your check of the log to see if this worked as expected. I would really like to get #576 merged ASAP

@trz42

trz42 commented May 15, 2024

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@trz42 Can you do your check of the log to see if this worked as expected. I would really like to get #576 merged ASAP

Checked the logs. Didn't find anything that lists the "build" time of the GROMACS executable. I'd say, just go ahead with deploying #576

@trz42

trz42 commented Jul 29, 2024

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Obsolete.

@trz42 trz42 closed this Jul 29, 2024
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@trz42 @ocaisa @truib